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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 481aa MW: 53879.3 Da PI: 4.3901 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 70 | 123 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+ +++ ng kr +lg+f ta eAa a+++a+k ++g XP_016441364.1 70 CKYRGVRQRT-WGKWVAEIREpVYNsNG--KRLWLGTFSTAVEAAIAYDEAAKVMYG 123 79*****999.**********7777665..***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-13 | 70 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.55E-31 | 70 | 132 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-21 | 71 | 132 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-34 | 71 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-29 | 71 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.51 | 71 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MSSHNFQRRM RRRRNGSASI EETLSMWKNQ KQELNATLDG GIKKKTRNFP AKGSKKGCMR 60 GKGGPENLGC KYRGVRQRTW GKWVAEIREP VYNSNGKRLW LGTFSTAVEA AIAYDEAAKV 120 MYGQNAILNF PDYSVQNSEL ANYSTSVSIA RTASLESSES SVEDSRIEPD LQISHTPDDG 180 VVAITDGKTI LDDPTNLCSD GRADGDPRAQ QDSSVCCLNM ESVVMEVDDS LDDIKGLNCS 240 TRIDSEPILE PASSCVKVQT PSDNDFVQDR RLECVDDANK VSNSKHILHH EITDVKPNDS 300 IFQHHDVLIQ NENYESGDQV LLPCDPIALT DYDCLVNALQ EQPLDFRSSD NTSAYIRSHL 360 EYAEYLLMED NNTTEATTVS DTFWLNENIN LQSFLDESFD VNNLKNEELP DNYNYDQQIN 420 LLKSRTNAEV HSDGVISKGG ESNELCINIP GHEDHGTEVN MEDLYILNSH FDISSFLGDN 480 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 69 | 131 | 3 | 63 | ATERF1 |
3gcc_A | 7e-20 | 69 | 131 | 3 | 63 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 12 | RRMRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768300.1 | 0.0 | PREDICTED: uncharacterized protein LOC104219331 | ||||
Refseq | XP_016441364.1 | 0.0 | PREDICTED: uncharacterized protein LOC107766960 | ||||
TrEMBL | A0A1S3XNE9 | 0.0 | A0A1S3XNE9_TOBAC; uncharacterized protein LOC107766960 | ||||
TrEMBL | A0A1U7W220 | 0.0 | A0A1U7W220_NICSY; uncharacterized protein LOC104219331 | ||||
STRING | XP_009768300.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 3e-36 | ERF family protein |