PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440816.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 538aa    MW: 59952.4 Da    PI: 8.356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-1817981198
                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +s  l +p kf+++++g    s t  l  +sg+sW + l   +++++ ++ +GW +Fvk++ L++gD +vF++dg+  f  +v +f+
  XP_016440816.1 17 IQSETLKIPSKFIKHMEGR--ASGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASFVKDHCLESGDALVFRYDGDLHF--TVLAFD 98
                    556789*******777777..4459***************..99999***************************997666..787776 PP
2B357.52.6e-18236330198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l+v
  XP_016440816.1 236 FMKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVHKCE--LRV 326
                     889999999*****************6..34999****************77566666699***********************998554..588 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +v+r
  XP_016440816.1 327 HVLR 330
                     8877 PP
3B348.61.4e-154305121297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++
  XP_016440816.1 430 GSYTLKVPYQFSMEHL--PNCRTEIVLRNLKGECWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYEMRVHIC 512
                     5567899****99996..45889****************8888887789999*********************998..566688887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-233101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-243102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-17798No hitNo description
PROSITE profilePS5086314.0437100IPR003340B3 DNA binding domain
SMARTSM010194.7E-139100IPR003340B3 DNA binding domain
PfamPF023621.0E-151699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-23228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24229331IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-20234330No hitNo description
PfamPF023625.3E-16236330IPR003340B3 DNA binding domain
SMARTSM010194.7E-16236332IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803236332IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-24414512IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-23414512IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-19417512No hitNo description
PROSITE profilePS5086312.717419515IPR003340B3 DNA binding domain
SMARTSM010192.7E-11419515IPR003340B3 DNA binding domain
PfamPF023625.3E-13422512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MWDAKRPHFL VGFNPSIQSE TLKIPSKFIK HMEGRASGTA FLVGPSGNSW PMDLIQQDDG  60
LFFHNGWASF VKDHCLESGD ALVFRYDGDL HFTVLAFDES SCEKEAAYNA DCSQGATNLY  120
NLALKKRDRG NSALLDCIVE GVPKKMRSTQ SPSECTAEDA VCSNGRSYAS SFLNEIENAG  180
NASNNTVTIA VPSQTEIVCS NPEVKTGNGT SEEPMWLSAQ EAEKVARSFT SSFPNFMKVM  240
KRFNVSGSYT LNIPYQFATE HLPKCKVKIL LHNLKGKTWT VNSIPTTRVQ TSHTFCGGWL  300
SFVRDNNIDL GDICIFELVH KCELRVHVLR VEKEGNDYSS KVAKAKTYDK RGSAHGKEKH  360
GNMLKSHQLH LSKICSGDSV IRKPAQVKQG SFTKSCMSMK SVPEEKLAAE SFISNFPHFV  420
RIMKKFNISG SYTLKVPYQF SMEHLPNCRT EIVLRNLKGE CWTVNSIPTM KVQTLHTFCG  480
GWSAFVRDND IQMGDICIFE LVGKYEMRVH ICAIGKKGLD YRNGITSNES AILASLTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-139CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9754431e-139HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-139HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440816.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A1S3XLK40.0A0A1S3XLK4_TOBAC; B3 domain-containing protein Os01g0723500-like isoform X2
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-22B3 family protein