PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440619.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 676aa    MW: 75700.6 Da    PI: 6.7446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05911091126
                     GTS...--TTTTT-SS-SS CS
         zf-CCCH  11 rtG...tCkyGdrCkFaHg 26 
                     +tG    C+y d+C+F+H+
  XP_016440619.1  91 KTGkvsACPYSDKCRFSHD 109
                     6777779***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.705.0E-73320563IPR013785Aldolase-type TIM barrel
SuperFamilySSF513954.08E-63324637No hitNo description
CDDcd028016.48E-91324559No hitNo description
PfamPF012074.6E-52327594IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360408426IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MREVHEGIYG NHSSADSLVL KLVRVGYYWP RMEQDAKDFI RECDKCQRYT PLVHQTNKTL  60
TFGSVPMSVH EMGDGHRHTA TTGSWKGKXA KTGKVSACPY SDKCRFSHDL EAFKAEKPAD  120
IEGSCPFLVY EGPCPYGLAC RFAGTHEDDV SAQTEKISRK SFELNFFNKD TQKLLWKNKM  180
KFPKAEATLK LLGLKGHPKN KILVDKEEND EVVPKEPATD TKTDSNEAAS DCSNKVEITP  240
SISPEDDVDE NNLADDIRPL KKAKSSIDEI CSSQVSNGSS VQGEVLDSNC DVNKSEPTAD  300
TVTDSDKSLK LHPREKKLID FRDKLYLAPL TTVGNLPFRR VCKVLGADVT SGEMAMCTNL  360
LQGQASEWAL LRRHSSENLF GVQICGAYPD TVTKTVELIE QECTVDFIDI NMGCPIDIVV  420
NKGAGSALLT KPMRMKSVVE AASATVGIPV TIKVRTAYFE GKNRIDSLIA DIGNWGATAV  480
TIHGRSRQQR YSKLADWDYI YQCVQRAPKS LQVLGNGDVF SYLDWNKHKT DSPELSTCMI  540
ARGALIKPWI FTEIKEQRHW DITSGERLDI LKDYARFGLE HWGSDSKGVE TTRHFLLEWL  600
SYTCRYVPVG LLDIIPQRIN WRPPSYYGRD DLETLMASDS AADWIRISEM LLGKVPVGFS  660
FSPKHKSNAY DRAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A2e-2732156827266tRNA-dihydrouridine synthase B
6ei9_B2e-2732156827266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992530.0KM399253.1 Solanum tuberosum FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440619.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A1S3XLB00.0A0A1S3XLB0_TOBAC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
STRINGXP_009611085.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]