PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 422aa MW: 46999.4 Da PI: 9.0931 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 71 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_016440480.1 71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 130 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-17 | 71 | 139 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-13 | 71 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-26 | 72 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 72 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.073 | 72 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 120 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MASPSSEPTA KPEGSSGNDV GGGETSEAMG SIGTDQLLLY RGPKKAKKER GCTAKERISK 60 MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDEEEAAARA 120 YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NVSREDYLAS LRRKSGGFSR GISKYRPLSS 180 RWDLQFGRVP GADYFNSLQY GDDATVNNEY IGGFCMDRKI DLSSYIKWWG GNKARQTDSH 240 LKTSEETKVG CPEDIDNELR ASELSIQQTE PYEMPRFGVC QERKNHKSSA LSAMSILSQS 300 AAYKSLQEKV AKKKEKVENE NKSTINRVDR GKTIEKSSPD SGSKRLGAAF LNPGGSSISK 360 NLHPLTPLLS APLLTNYNNV DPLTDPVLWT SLVPIFHTGS SRTAEVHKSE ATSDYTLFQQ 420 ED |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631194.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Refseq | XP_016440480.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-154 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A1S3XKH4 | 0.0 | A0A1S3XKH4_TOBAC; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
STRING | XP_009631194.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10734 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-135 | AP2 family protein |