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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 30215.8 Da PI: 6.0646 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.4 | 6.4e-25 | 87 | 176 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + + tr gC a l+v ++ ++kw+vtk+++eHnH+l+ XP_016440137.1 87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVEEHNHALM 176 6******************************************98883332.2448899**************.9***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.1E-22 | 87 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGFYKSDVAM GSPSSPAFGL DERKDFPPVE SNDDHGYFDE ELTTDMDMYI AEDDKCLGHS 60 NGEQTSSDDA IEPQIGMEFN SRDDARDFYM AYGRRIGFTV RIHHNRRSRI NNVVIGQDFV 120 CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVEE HNHALMSPSK 180 VPWRGSTKKL DEKDQRIREL TLELYNERQR CKRRCAAYQE QLRTLLKFIE DHTDHLSRSV 240 EEAVQRVKEL DNERLEESD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 212 | RQRCKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016440137.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
TrEMBL | A0A1S3XKE2 | 0.0 | A0A1S3XKE2_TOBAC; protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
STRING | XP_009779431.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-39 | FAR1 family protein |