PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 262aa MW: 30530.1 Da PI: 6.0646 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.4 | 6.6e-25 | 87 | 176 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + + tr gC a l+v ++ ++kw+vtk+++eHnH+l+ XP_016440135.1 87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVEEHNHALM 176 6******************************************98883332.2448899**************.9***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.1E-22 | 87 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGFYKSDVAM GSPSSPAFGL DERKDFPPVE SNDDHGYFDE ELTTDMDMYI AEDDKCLGHS 60 NGEQTSSDDA IEPQIGMEFN SRDDARDFYM AYGRRIGFTV RIHHNRRSRI NNVVIGQDFV 120 CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVEE HNHALMSPSK 180 VPWRGSTKKL VSQDEKDQRI RELTLELYNE RQRCKRRCAA YQEQLRTLLK FIEDHTDHLS 240 RSVEEAVQRV KELDNERLEE SD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 215 | RQRCKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779431.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
Refseq | XP_009779432.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
Refseq | XP_009779433.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
Refseq | XP_016440133.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1 | ||||
Refseq | XP_016440134.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1 | ||||
Refseq | XP_016440135.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1 | ||||
TrEMBL | A0A1S3XJW9 | 0.0 | A0A1S3XJW9_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X1 | ||||
TrEMBL | A0A1U7WLI6 | 0.0 | A0A1U7WLI6_NICSY; protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
STRING | XP_009779431.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-37 | FAR1 family protein |