PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 37276.9 Da PI: 6.9826 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.2 | 1.2e-56 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkd+e+++ XP_016440125.1 16 LPPGFRFHPTDEELITYYLAPKVLDCNFSA-KAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCIRDKKYPTGQRTNRATEAGYWKATGKDREIFR- 108 79**************************99.88***************888999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+g kt+Wvmheyrl XP_016440125.1 109 SKTLVGMKKTLVFYKGRAPRGDKTNWVMHEYRL 141 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-64 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.81 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
METVCGFEGH EEEMELPPGF RFHPTDEELI TYYLAPKVLD CNFSAKAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCIRDK KYPTGQRTNR ATEAGYWKAT GKDREIFRSK TLVGMKKTLV 120 FYKGRAPRGD KTNWVMHEYR LDGKYSVHNL PKSAQNECVI CRIFKKSSGG KKIAISSLIR 180 NNNMTESPRS SNLPPLMEMS PYNNQITTTT RSSGETSNSH VTCFSDSVED QKPQIHHPLA 240 CSPASVDFPK YPSNIPNQVM QPYVENFQYA DSGLMQDNSI LRFLLENNNY GSESKQNNHM 300 RGYEDHNDFN ISSAGPVDLD CLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609037.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Refseq | XP_016440125.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Refseq | XP_018628579.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9FLJ2 | 1e-121 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1S3XJH2 | 0.0 | A0A1S3XJH2_TOBAC; NAC domain-containing protein 92 | ||||
STRING | XP_009609037.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-110 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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