PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439920.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 508aa    MW: 56170.9 Da    PI: 5.1262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.93.5e-1031225021374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsP 89 
                     lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s+s  +k++ +p+ ++e+++ ++laa++l++++sP
  XP_016439920.1 122 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGsTNMERLAAHFTDALQALLDGaaSGSLHAKSMfSPNYKDEQQQGDVLAAFQLLQDMSP 216
                     68***********85554449****************99*****************994333333344447777888889*************** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     ++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g pf+f+ 
  XP_016439920.1 217 FVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALLSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQPFSFHH 311
                     ***********************************************776556*********888899999************************ PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdslea 273
                        ++ e++++ +L++ +gEa+++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+    ++e F+ rf+++l++ysal+dslea
  XP_016439920.1 312 CRLDSDETFKPPALKLVRGEAIIINCMLHLPHFTYRASDS---VASFLSGSKTLNPRLVTLVEEEVRPieEEEGFVGRFMDTLHHYSALYDSLEA 403
                     9999****************************98554444...459*******************987778899********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     ++p +s++r+ vEr++lg++i   +a   + r e+++  ++W e+l+ +G+++ ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L
  XP_016439920.1 404 GFPLQSRARALVERVFLGPRIIGSLARTYRTRGEDER--SSWGEWLSVVGYHESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRL 495
                     *******************************999888..99*******************************.******9768999********* PP

            GRAS 368 vsvSaWr 374
                     +s+S W+
  XP_016439920.1 496 LSASIWT 502
                     ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.42196482IPR005202Transcription factor GRAS
PfamPF035141.2E-100122502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MATMMVDGTV PDFDYYSGLS TTTTTTTTTT TTTTTTSSSD DDHDHGCTWN DWSPVVDWEA  60
FSGGDNFQDL IESMIEGNNS SGGLNISIPK SSTFYNSEDS VLMEEPEESN NNQSEDVNGL  120
KLVHLLMAAA EALTGVNKSR ELARVILVRL KELASPNGST NMERLAAHFT DALQALLDGA  180
ASGSLHAKSM FSPNYKDEQQ QGDVLAAFQL LQDMSPFVKF GHFTANQAIL EAVAHDRRVH  240
IVDYDIMEGI QWASLMQALL SRKDGPPTPH LRITALSRSG SGRRSFGTVQ ETGRRLTAFA  300
ASIGQPFSFH HCRLDSDETF KPPALKLVRG EAIIINCMLH LPHFTYRASD SVASFLSGSK  360
TLNPRLVTLV EEEVRPIEEE EGFVGRFMDT LHHYSALYDS LEAGFPLQSR ARALVERVFL  420
GPRIIGSLAR TYRTRGEDER SSWGEWLSVV GYHESNISFA NHCQAKLLLG LFNDGYRVEE  480
IGTNKLVLGW KSRRLLSASI WTSPDSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-591065022378Protein SCARECROW
5b3h_D4e-591065022378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439920.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1S3XIX30.0A0A1S3XIX3_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009627108.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-153GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]