PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20489.8 Da PI: 9.0752 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.5 | 2.7e-11 | 12 | 54 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ ++k+ +v +s+ ++ + K A LS+LC++++a+iifs t XP_016439864.1 12 KFLKDKRVEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSIT 54 567899999*******************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0039 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.568 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-5 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-14 | 6 | 84 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-9 | 15 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-5 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-5 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MTYQMKNKSE KKFLKDKRVE KVALSNKQKA LSKRAMDLST LCGIDIAIII FSITAEPFLF 60 GNPNVESVVE RFLPAKQPFY NMSSRETTHE KLEVCGKKDK MKKKEKKATN EEEKGKSTLE 120 IFNPTNLERL EKLMQEIDEL EKDLTQKIDE LQLEIGAKES KSVLEMNVTN PSTNWLSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439864.1 | 1e-126 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1S3XJ38 | 1e-125 | A0A1S3XJ38_TOBAC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_009586738.1 | 2e-92 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-08 | AGAMOUS-like 61 |