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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 215aa MW: 24292.5 Da PI: 10.0406 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.6 | 2.5e-32 | 47 | 104 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAas+Ggh+vDGCgEf+ps++++ +++++lkC CgCHRnFHRre+++ XP_016439200.1 47 VVTYKECLKNHAASIGGHTVDGCGEFIPSPSATaADPTSLKCDVCGCHRNFHRREPDD 104 689***************************99999********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-22 | 48 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-27 | 48 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.1E-30 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.538 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 126 | 195 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.91E-18 | 127 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-24 | 133 | 189 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDSTCSIPTP TPIPTKTQVP LIKPLSFTNV TSKKHHQVHN HQPPSAVVTY KECLKNHAAS 60 IGGHTVDGCG EFIPSPSATA ADPTSLKCDV CGCHRNFHRR EPDDDFMDIR HHHAQVATPA 120 TPTALKPENP RRRRRFRTKF SQEQKNKMYS FSEKLGWRLQ KCDEAKVDEF CNEIGVGKGV 180 FRVWMHNNKS TLGKKDFQNA NNSTRPYPTT TNSKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-20 | 134 | 191 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788413.1 | 1e-162 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Refseq | XP_016439200.1 | 1e-162 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 3e-55 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1S3XGW0 | 1e-161 | A0A1S3XGW0_TOBAC; zinc-finger homeodomain protein 9-like | ||||
TrEMBL | A0A1U7XC14 | 1e-161 | A0A1U7XC14_NICSY; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_009788413.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 3e-53 | homeobox protein 30 |
Publications ? help Back to Top | |||
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