PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 656aa MW: 74927.4 Da PI: 5.1564 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.1 | 5.1e-22 | 131 | 214 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ + ++w+v++++leHnH + XP_016439120.1 131 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVEPSRWRVDEVKLEHNHLF 214 69****************************************99888.....8999*******************************77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-19 | 131 | 214 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.0E-26 | 334 | 420 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.916 | 537 | 573 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-5 | 548 | 575 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.0E-5 | 548 | 570 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MEEGLGTSEQ LPEDEGGDNE VDSEEAFDIT CNGIESDGHQ VLNVEANELE ATTGQILEFE 60 SDEAEKNCEH VLDFESSDPR DNSHQLLEFH SNGLGGGDTT IIDDHTGSSP GKSYPPPVVG 120 MEFESYEDAY NYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF KTMKEANSRR 180 KETRTGCLAM IRLRLVEPSR WRVDEVKLEH NHLFDPERVQ NSKSHKKMDA GVKRKLEPAV 240 DVEVRTIKLY RTPAVENLGY GSSDERAFSG QIDGSARLKL KEGDTQVIYN FFCRMQLMRP 300 NFFYIMDLND EGYLKNVFWI DSRSRGAYAY FGDVVVVDTT CLSKKYDIPL LAFFGLNHHK 360 QTLLLGCGLL ADESFETYVW LLRAWLSCMS GRPPQSIITD RCMALQNAIS EVFPRAQHRL 420 NLSIILGSIF NTVGQVGESE VFREVLYNTV YNSLKVDEFE VAWEEMIHQF GFRGYGWLQS 480 LYEDRERWAP IYMKDTFFAG ISIDQPGIAQ IHANGPIITY IVKERGAQGD TGDARDFEVT 540 YDKMGVEVRC ICSCFNFKGY LCRHALSVLN YNSIEEIPNH YILTRWRKDF KRLYAPELGS 600 SNIDISNPVQ RFDHLHKRAM QVVDEGMTSQ DHYMVAWQAF KESLNKVRLA ADKHVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439120.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
Swissprot | Q9S793 | 1e-161 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A1S3XGN3 | 0.0 | A0A1S3XGN3_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
STRING | XP_009631083.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-163 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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