PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438819.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 433aa    MW: 47249.6 Da    PI: 8.5924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.5e-114873227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_016438819.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                    6899********************97 PP
2zf-CCCH40.15.9e-1393118227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_016438819.1  93 GQPECQYYLKTGTCKFGATCKFHHPK 118
                     5799********************96 PP
3zf-CCCH39.49.9e-13140164327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_016438819.1 140 EAECAYYMRTGQCKFGSTCKFHHPQ 164
                     689********************97 PP
4zf-CCCH37.92.9e-12293319127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_016438819.1 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319
                     5789*********************96 PP
5zf-CCCH40.25.8e-13339365127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_016438819.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.62991119IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-591118IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-694120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-597117IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6139165IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596292320IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6292319IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5298322IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037338366IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPTYPP  180
VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQAV VSVPGFAYSG QMGSISSPEG  240
QQQTAGNSQV YGTSRSGDAV NMGSQGVTSP YRPASVPMGY YALQGENVFP ERPGQPECQF  300
YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK  360
FDHPMTVFTY SISASSPTDA PAVQRLLGSS SGTSALTLTS EGLVEAVSTK PRRLSLSDTR  420
KMPPGDNNID REG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793876.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_016438819.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S3XG870.0A0A1S3XG87_TOBAC; zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7XW870.0A0A1U7XW87_NICSY; zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_009793876.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1