PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438422.1
Common NameJAF13a
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 623aa    MW: 70021 Da    PI: 6.0325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13437480755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR++iN++f  L ++lP+      +K++K++ L +++eY+k+L+
  XP_016438422.1 437 ISERRRREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 480
                     78*********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.5E-5215202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.923430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-12433484No hitNo description
SuperFamilySSF474596.8E-16434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16435491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10437480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAMGHQDQEG VPNNLRKQLA LAIRGIQWSY AIFWSTPVTK PGVLEWSDGY YNGDIKTRKT  60
VQAGEVNEDQ LGLHRTEQLR ELYSSLLTGE SEEDLQPQAK RPSAALSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKSASIQTV VCFPYLGGVF  180
ELGVTELVLE DPNLIQHIKN TFEVDHSVIP KRPNYVSNDA KDDTNVVSRK LDCNVLEIEA  240
YPVEMNNSSP HDSSNGFVAN QEAEDSLMAV GIIGETSQAQ SWKFVDDNMS NGVHNSLNSS  300
DCISQNYEKL SPLSNGEKET KPCPIDRQEH NQNKLHLLDH QGDDAQYQAV ISTLLKSSDQ  360
LTLGPHFRNI NKKSSFAGWK NDTETPRIGT AQKLLKKVLL EVPRMHGGVT HKFSRENRKK  420
NCLWRPEVDD IDRSRVISER RRREKINERF MHLASMLPTG GKVDKISLLD ETIEYMKELE  480
RRVQELEARS GKKTNDTAEQ TSDNCGTSKF NDVKGSSLKR KACDLDEIEL ESRNELLKGS  540
SADSIVINMI DKEVSFKMRC LWSEGLLLKI MEALTDLQMD CHTVQSSKID GILSIAIESK  600
SNGLKTVSVG AIREVLQRVV WKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-181620512195Transcription factor MYC3
4rqw_B3e-181620512195Transcription factor MYC3
4rs9_A3e-181620512195Transcription factor MYC3
4yz6_A3e-181620512195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438443ERRRRE
2439444RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3057680.0KF305768.1 Nicotiana tabacum cultivar SamsunNN JAF13-like protein (JAF13a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438422.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_016438423.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_016438424.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_016438426.10.0PREDICTED: transcription factor EGL1-like isoform X1
TrEMBLA0A1S3XEW80.0A0A1S3XEW8_TOBAC; transcription factor EGL1-like isoform X1
STRINGXP_009600065.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-176bHLH family protein