PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438197.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 491aa    MW: 55970.8 Da    PI: 4.3517
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.74e-52291552128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPtdeelvv+yLk+k+ ++++ l ++i+e+d+yk++P+dLp  +k+k+++++w+fFs+r++ky++g r+nratk+gyWkatgkd+ +++
  XP_016438197.1  29 PPGFRFHPTDEELVVYYLKRKICRRRILL-DAIAETDVYKWDPEDLPdlSKLKTGDRQWFFFSPRERKYPNGARSNRATKHGYWKATGKDRIITC 122
                     9*************************999.99**************96559999***************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfykgrap ge+tdWvmhey++
  XP_016438197.1 123 -NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 155
                     .999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-6022178IPR003441NAC domain
PROSITE profilePS5100555.94828178IPR003441NAC domain
PfamPF023658.1E-2829154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKLLVDSSTP SSSSACKEIK VFGESNIFPP GFRFHPTDEE LVVYYLKRKI CRRRILLDAI  60
AETDVYKWDP EDLPDLSKLK TGDRQWFFFS PRERKYPNGA RSNRATKHGY WKATGKDRII  120
TCNSRAVGVK KTLVFYKGRA PVGERTDWVM HEYTMDEEEL KRCKNAQDYY ALYKVFKKSG  180
PGPKNGEQYG AYFREEDWVD DECPVAEVSV QQENSTKHVN EVPAAADDAL EELLKRIADD  240
EHVLLEPFFV DNDYALDQLV QEEDTESTLL DQSSMEVNLY NHCAVVGPSC QQYNANTSFD  300
LTQSGTSQLQ LHEAAEVSSA PVNPEKVLPA VEEDFLEDFL EMDDLLGPEP SVQNFDDSAL  360
SIQNFDNQTP NGQIFDKPAG NLGTVQFDDF DGLGEFDLYH DAHLLLDNEG TSVGQNAELY  420
MNNFVNGIAY PDSTTYMSTF QNGMMNNRQM HLNHENQINH QLWRHDESFN VFNPIEGDQS  480
VVHQATSDGW Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-482817817165NO APICAL MERISTEM PROTEIN
1ut4_B5e-482817817165NO APICAL MERISTEM PROTEIN
1ut7_A5e-482817817165NO APICAL MERISTEM PROTEIN
1ut7_B5e-482817817165NO APICAL MERISTEM PROTEIN
3swm_A6e-482817820168NAC domain-containing protein 19
3swm_B6e-482817820168NAC domain-containing protein 19
3swm_C6e-482817820168NAC domain-containing protein 19
3swm_D6e-482817820168NAC domain-containing protein 19
3swp_A6e-482817820168NAC domain-containing protein 19
3swp_B6e-482817820168NAC domain-containing protein 19
3swp_C6e-482817820168NAC domain-containing protein 19
3swp_D6e-482817820168NAC domain-containing protein 19
4dul_A5e-482817817165NAC domain-containing protein 19
4dul_B5e-482817817165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375250.0KF437525.1 Nicotiana benthamiana putative membrane bound NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438197.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
TrEMBLA0A1S3XE920.0A0A1S3XE92_TOBAC; NAC domain-containing protein 17-like isoform X2
STRINGXP_009786294.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-93NAC domain containing protein 17