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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016438196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 612aa MW: 68706.3 Da PI: 4.5673 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.9e-52 | 29 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPtdeelvv+yLk+k+ ++++ l ++i+e+d+yk++P+dLp +k+k+++++w+fFs+r++ky++g r+nratk+gyWkatgkd+ +++ XP_016438196.1 29 PPGFRFHPTDEELVVYYLKRKICRRRILL-DAIAETDVYKWDPEDLPdlSKLKTGDRQWFFFSPRERKYPNGARSNRATKHGYWKATGKDRIITC 122 9*************************999.99**************96559999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfykgrap ge+tdWvmhey++ XP_016438196.1 123 -NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 155 .999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-60 | 22 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.948 | 28 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MKLLVDSSTP SSSSACKEIK VFGESNIFPP GFRFHPTDEE LVVYYLKRKI CRRRILLDAI 60 AETDVYKWDP EDLPDLSKLK TGDRQWFFFS PRERKYPNGA RSNRATKHGY WKATGKDRII 120 TCNSRAVGVK KTLVFYKGRA PVGERTDWVM HEYTMDEEEL KRCKNAQDYY ALYKVFKKSG 180 PGPKNGEQYG AYFREEDWVD DECPVAEVSV QQENSTKHVN EVPAAADDAL EELLKRIADD 240 EHVLLEPFFV DNDYALDQLV QEEDTESTLL DQSSMEVNLY NHCAVVGPSC QQYNANTSFD 300 LTQSGTSQLQ LHEAAEVSSA PVNPEKVLPA VEEDFLEDFL EMDDLLGPEP SVQNFDDSAL 360 SIQNFDNQTP NGQIFDKPAG NLGTVQFDDF DGLGEFDLYH DAHLLLDNEG TSVGQNAELY 420 MNNFVNGIAY PDSTTYMSTF QNGMMNNRQM HLNHENQINH QLWRHDESFN VFNPIEGDQS 480 VVHQATSGVV YDNNTNHPVG ANQNPIAKKN DGAQSWISSN LWAFVDSIPT TPASAAESAL 540 VNRAFERMSS FSRMKLNARN MNVAAGNTSA ASSSSGKSKN GFFCFSLLGV LCAILWVLIG 600 ISDKILGRYI SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-49 | 28 | 184 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437525 | 0.0 | KF437525.1 Nicotiana benthamiana putative membrane bound NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438196.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like isoform X1 | ||||
TrEMBL | A0A1S3XDZ6 | 0.0 | A0A1S3XDZ6_TOBAC; NAC domain-containing protein 17-like isoform X1 | ||||
STRING | XP_009786294.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3212 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 2e-92 | NAC domain containing protein 17 |