PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016437770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 495aa MW: 54538.3 Da PI: 6.8991 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.3 | 1e-16 | 317 | 364 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_016437770.1 317 VTHNQSERKRRDKINQRMKTLQKLVPNS-----SKTNKASMLDEVIEYLKQLQ 364 69*************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.453 | 314 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.36E-17 | 317 | 368 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-19 | 317 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-14 | 317 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-19 | 318 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-18 | 320 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MNQCVPSWDL ENSLPHQNLA LSSHSNSNNS FVTDVPWLDY EVAELTWENG QLGMHGLGPP 60 RMPNNNKPLF NSYTWDNKAH VGGTLESIVN QAIGIPHDHR KSAVDGGGDR EEDLVHCFDK 120 CLVNTQASTA TVSVAMDALV PSFAHPQNFH QGEQLPTHVP GITTCLIGDS THVISRSGDV 180 NRTDGEMSRA KIGASSYEEI SKDLEITEYF GKQEVKNLIN ERHIDAVLLR SMADPSMSRR 240 DTIDTGERDL VAERFTSTSV MSTENTSSVK KCTSKRVDEH DSVCHSRSHR QETGDGDDKR 300 KGSKISSFST KRSLSAVTHN QSERKRRDKI NQRMKTLQKL VPNSSKTNKA SMLDEVIEYL 360 KQLQAQVQAM SGMNNNMSPM LANMAVLQQQ QQLQMASMGM GMAGFMHING ALISRPNITA 420 MPMPSLLHPT ASNFMPIASG VSPGDRNINA ASLVPDPLAA FPTCQSQPMN MDAYSRIAAL 480 YQQYLQPPAN LGFKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 327 | ERKRRD |
2 | 323 | 328 | RKRRDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016437770.1 | 0.0 | PREDICTED: transcription factor UNE10-like | ||||
TrEMBL | A0A1S3XCW4 | 0.0 | A0A1S3XCW4_TOBAC; transcription factor UNE10-like | ||||
STRING | XP_009609287.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4367 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-70 | bHLH family protein |