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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016437615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 610aa MW: 65420.4 Da PI: 8.4082 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9.5e-25 | 237 | 281 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_016437615.1 237 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVEG 281 79****************************************985 PP | |||||||
2 | QLQ | 60.3 | 5.4e-21 | 169 | 204 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT++Q+++L++Q+l+yK+L+an+PvP++Ll +++k XP_016437615.1 169 LFTPSQWMELEHQALIYKHLVANVPVPHQLLIPLKK 204 6*******************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-12 | 168 | 204 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.027 | 169 | 204 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-15 | 170 | 202 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 237 | 281 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.2E-21 | 238 | 280 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MDFGGVMTME TKQESANNIS KTVNSPAETN NSSKITNGSG QQLKQERSGP CDDTNCRSSK 60 VQRAAADDFS ALCKQMPQQQ GPTTPTLFMR SGSPNNGRGH STMLSFSSPK SEELIPFLST 120 NNASAQDSSK SLAFPLFDSG SHYSRASAYA SGGSNESTRG AFVARFRGLF TPSQWMELEH 180 QALIYKHLVA NVPVPHQLLI PLKKSLNPYA FSGLSSGSYA SNWGWGTFHL GFTGNTDPEP 240 GRCRRTDGKK WRCSREAVPD QKYCERHINR GRHRSRKPVE GQNGHAVSGS TTSKVASVAP 300 SSSATVISSS GTSNSLGAVQ HQFNSLQPSA ANPSTDQLVN RMQDHKGVSM ISPTIGLKPK 360 ASAISIQKQH NGFELSSLSE FGLVSSDSLL NPSQRSSFVN PKNSNAFIDF NDQEQSEQHP 420 VHHFIDGWTK EQSSRASASW PDELKSDWTQ LSMAIPMAAS DFSSSSNSPR QEKLTLSPLR 480 LSRDFDPIQM GLGVTNSHGE PMQKTANWLP VSWENALGGP LGEVLNSTAG NAGDAKNSSA 540 LNLATEMWDS SPPFGSSPTG VLQKSTFVSL SNSSSGGSPR ADSKKVHEGA GMCDEVIGST 600 LASSLCIPSM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016437615.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A1S3XCF0 | 0.0 | A0A1S3XCF0_TOBAC; growth-regulating factor 1-like | ||||
STRING | XP_009589483.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-108 | growth-regulating factor 1 |