PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437491.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 415aa    MW: 45744.6 Da    PI: 8.9704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06170193123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y Cp Cg++F+  ++L++H+ + H
  XP_016437491.1 170 YACPECGEVFPKIESLEHHQAVrH 193
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.512170198IPR007087Zinc finger, C2H2
SMARTSM003550.0025170193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
SuperFamilySSF563992.4E-23195411No hitNo description
Gene3DG3DSA:3.90.228.107.3E-11196411IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MALFTFLPEA SDTQKQPSKR RKKQQKQKQP SSWDQFKNLL SCRQIENSTD HDSSKNPTAA  60
VYYSKLGSCS SICSFNNVVL HHGNNTRVVH RADDNNSLED QSSMLGQETR LLSKKTSHGS  120
TSSRFFGSST RSNASTTSSR GMQLRKLSGC NECHMIVDPS RYPVPRSTIY ACPECGEVFP  180
KIESLEHHQA VRHAVSELGP EDSSRNIVEI IFNSSWLKKD NPICKIERIL KVHNTKRTIH  240
KFEDYRDAVK LRATVNVKKN PRCAADGNEL LRFYCTTLTC SLGAKGTSNL CSSVCTPGCG  300
VCTVIRHGFQ GNNNKVCGVR TTASSGRAHD CLGGGDGGRR AMLVCRVIAG RMKRVAEDAA  360
ATEEERGGSG SSAAGNFYDS VVGYSDIYSN LEELYVFNPR AILPCFVVIY KALES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781815.10.0PREDICTED: uncharacterized protein LOC104230649
RefseqXP_016437491.10.0PREDICTED: uncharacterized protein LOC107763518
TrEMBLA0A1S3XC460.0A0A1S3XC46_TOBAC; uncharacterized protein LOC107763518
TrEMBLA0A1U7X5R10.0A0A1U7X5R1_NICSY; uncharacterized protein LOC104230649
STRINGXP_009781815.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-143C2H2-like zinc finger protein