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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016437186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 395aa MW: 43722.1 Da PI: 4.3037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++ +++++g XP_016437186.1 123 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDVEARRIRG 172 69*******.**********94....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.66E-33 | 123 | 181 | No hit | No description |
SMART | SM00380 | 1.6E-36 | 123 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 123 | 182 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.171 | 123 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 123 | 182 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 124 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MCGGAIISDC IPPPRSSRRL TADLLWGCSD LNQKKNPFNY QYSKPLRSEV ADLDYDDFEA 60 DFQVFKDCTD DDEDAYKVDG LKSFAAFSAS EQSGGTCDGS KSLKSVDSDK EVEKSSKRKR 120 KNQYRGIRQR PWGKWAAEIR DPQKGVRVWL GTFNTAEEAA RAYDVEARRI RGKKAKVNFP 180 DEAPVPASRQ AGKVNPRKVL PKESSNPVLY DTTFVNNVDD GCYGNLGFFE EKPTKNLYGY 240 EDLCPTPGDM EPNSYVPPSA AAGVYFNSDQ GSNSFELSDF GWGETCSRTP EISSFLSAAV 300 ESDEAQFVEG ACPEEKLISC SNISAPNDGN TAPKLSEELS TFESQMNFFQ AQQSEGNLDA 360 SVDAFLNAAD ATQDGENEMD LWFFDELSSL MRGVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 123 | 180 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604966.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
Refseq | XP_016437186.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A1S3XB96 | 0.0 | A0A1S3XB96_TOBAC; ethylene-responsive transcription factor RAP2-2-like | ||||
STRING | XP_009604966.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-52 | related to AP2 12 |