PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436945.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 772aa    MW: 83998.2 Da    PI: 7.0049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06358378526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr++++ G C+ G++CkF+H+
  XP_016436945.1 358 YCRHYLK-GRCSEGEKCKFSHD 378
                     6******.*************7 PP
2zf-CCCH222.8e-07412432525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+++a  G+C++G+ C F+H
  XP_016436945.1 412 PCNNYASIGFCSRGADCLFSH 432
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.525353380IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014354379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6354378IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4357378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4358378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756382409IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027382408IPR000571Zinc finger, CCCH-type
SMARTSM003560.26410434IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5412432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474412435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4412433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MEVDLDLSNR TSDAIQGDRG HARTNDIDDM NRLVDKTRSF NDQMVEEPGN RCSTHESEVK  60
ESDPVGPVEL DKELSIDDVC ATIESCFGAD TVAELSQPAE VSGEEIPVPM THLTEEMEHG  120
LRLKEMELET LISSAGATDL SVHVPMGEEI EKGEVSGDFM VFDESDYDIV NDVRDEKKVE  180
AEKYPADIVD REDFAFDARD NPPQKRDAYA SSSIDAVDED YTSLGGKFIR KFGEEPKDNV  240
EKVFCSKDVG TRKVRVYDSI LDSGNVAKQV GGDMKLDHPA GFQFGATSAE KAKENKHLID  300
AAEDADIGKK KKKGGPLTKE KRAKKKAKER IKRAEKNRKL GVKRLKLPPV VKPKVVAYCR  360
HYLKGRCSEG EKCKFSHDTT PLTKSKPCCH FARQSCMKGD DCPFDHQLSK YPCNNYASIG  420
FCSRGADCLF SHEITVKMAA VTSPTASNLE LMSPSAPSNS NSLMQINTYG VSHKDVNSSS  480
GSAGFVPGKC TERTVLEPVQ KPAACTPKGV TFLSHGKSLQ GDARKHEKAG LSSKADDVGK  540
LSCQMIHNKH EKAGLMKGVS PRTPQGINFL SFGQAPSAEP SGDTYSGLFN MDYGVKKLLP  600
GGMNNSIEAA TCAKRDGSVK DDNQANLSAS LWSMNQMSTR TPHASAPRGI SFLSAEKAAQ  660
DISRPNEFNR ASSPIQRRPS AAEKTSDEMP FRQSSSLFPA GQSLNYQSAQ KCSMGIASSS  720
KTPFLANTQP SSIQKALQST LAFAAKFDLG VKFGTSNGST NITSSINHSK DR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328KRAKKKAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436945.10.0PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X2
RefseqXP_016436946.10.0PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X2
TrEMBLA0A1S3XAJ00.0A0A1S3XAJ0_TOBAC; zinc finger CCCH domain-containing protein 65-like isoform X2
STRINGXP_009802985.10.0(Nicotiana sylvestris)