PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436438.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20279.8 Da    PI: 8.4766
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.2e-131561147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ienk  r  tfskRr+g+ KKA  L   Cd+++ +++ s+tgk +
  XP_016436438.1 15 KKIENKDDRFATFSKRRTGLYKKAGNLVSQCDVDIGIVLSSPTGKPF 61
                    68******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-18766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.535767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-20878IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-13929IPR002100Transcription factor, MADS-box
PfamPF003197.5E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVSKKTKGRQ KIAMKKIENK DDRFATFSKR RTGLYKKAGN LVSQCDVDIG IVLSSPTGKP  60
FSFFHPTNDV VIARFQNPDM QLSEINHLVA AHARNKVNHL SSRLEEFDTR EDAATAQTRF  120
YDKMIETRES GWWESIEQLN ADEMTKFEAW LDNAMFNLNN HLNQLEVGAS SSSPNYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436438.11e-132PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S3X9J11e-130A0A1S3X9J1_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009616563.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.18e-26AGAMOUS-like 57