PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_016436404.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 231aa MW: 25036.5 Da PI: 8.7169

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.3e-41	50	149	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqql++l+ael+ XP_016436404.1 50 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQLQTLQAELN 144 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_016436404.1 145 AIRSE 149 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.991	49	150	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-41	50	147	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSRERERLDE IGKKLKTEID ASSQLHMQQQ MGRRQILGPA AGTTLNTITP CAACKLLRRR 60 CAEECPFSPY FSPHEPQKFA AVHKVFGASN VSKLLLEVPV GQRADAANSL VYEANVRLRD 120 PVYGCMGAIS TLQQQLQTLQ AELNAIRSEI LRYKYREAAN NLIASISTSV ADQLPQAPPT 180 PPPPPPPLPS VVVVSSSSST SSVSSLYTPP SSAGANFSAA IHNNSISYFD Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	40	157	1	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	40	157	1	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589291.1	1e-169	PREDICTED: LOB domain-containing protein 15-like isoform X2
Refseq	XP_016436404.1	1e-169	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-76	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1S3X9B5	1e-168	A0A1S3X9B5_TOBAC; LOB domain-containing protein 15-like
STRING	XP_009589291.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-78	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]