PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016436136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 152aa MW: 16390.6 Da PI: 10.4151 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.6e-19 | 24 | 58 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ XP_016436136.1 24 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 58 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.624 | 18 | 54 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.0E-15 | 18 | 68 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-13 | 19 | 58 | No hit | No description |
CDD | cd00202 | 2.12E-12 | 23 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 23 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.0E-17 | 24 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MDLSDKGWGS EDMMSQAESQ LKTCADCGTT KTPLWRGGPA GPKSLCNACG IRSRKKRRAL 60 LGLNKEDKKL KKSSENKNQY CSNSSTSSSG DSTSSSSSNG CLLKKKFLPF GRQVVALQRP 120 RSRSRSSSTH KLGEVEQAAF LLMALSCGSV YA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016436136.1 | 1e-106 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 1e-32 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1S3X8C2 | 1e-105 | A0A1S3X8C2_TOBAC; GATA transcription factor 15-like | ||||
STRING | XP_009795635.1 | 1e-105 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 3e-33 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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