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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_016435989.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
RAV |
| Protein Properties |
Length: 387aa MW: 43588.2 Da PI: 9.5134 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016435989.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 42.4 | 1.8e-13 | 63 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g
XP_016435989.1 63 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQRFRG 111
78****9888.8*********3.....5*************************98 PP
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| 2 | B3 | 105.2 | 3.4e-33 | 198 | 296 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++++
XP_016435989.1 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNTSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGEDKQ 292
89****************************99999****************************************************88667777 PP
.EEE CS
B3 92 lvvk 95
l++
XP_016435989.1 293 LYID 296
7765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MEGSSSIDES TTSDSLSIAP AISTSTLPVM KSPESLCRMG SGTSVIIDAE NGVEAESRKL 60
PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR GRDAVTNFKP 120
LLENEENDDM EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KNYGFSKDGK RTYCTKDGLM 180
SSFFSSVDKV NKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGN TSKGVLLNFE 240
DLNGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGED KQLYIDFKAR 300
NATPTISPTV ASQVQVQVQV PQVQMVRLFG VNICKVPAVN NVVINNNNNN NNDNNMTSCS 360
GGKRRIEMEL LTFESCRKKQ RVIINAL
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
| Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
PLoS Genet., 2016. 12(2): p. e1005833
[PMID:26829043] - Zhao Y, et al.
ABA receptor PYL9 promotes drought resistance and leaf senescence.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
[PMID:26831097]
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