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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016435853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 269aa MW: 29822.1 Da PI: 10.1757 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9e-11 | 62 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rW ++E+ ++ + ++lG g+W+ Ia+++ Rt q+ s+ qky XP_016435853.1 62 RWGEDEHRAFLIGLEKLGRGNWAGIAKEFVPSRTHTQVASHAQKY 106 9*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.685 | 55 | 111 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-14 | 58 | 109 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.72E-13 | 58 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-7 | 59 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-10 | 59 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.32E-7 | 62 | 107 | No hit | No description |
Pfam | PF00249 | 1.6E-8 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAKEIHSERR GEISRTKKVG SSSNSIKLFG VVISTTSESS SSRSRSANMG RRNNNNSNKG 60 TRWGEDEHRA FLIGLEKLGR GNWAGIAKEF VPSRTHTQVA SHAQKYFERL VAEKDNKRAV 120 IKRQKSSVFD INLAEESCPS SSPTNQPVSE EASSVVIPVT KDNSKGKEYL NQQTPISPMP 180 ISYRVPGFPP IPMAYSKNSS NDRGPHVYTA SWVPNIRFNG NYAYFPMTYY QFANISAHNF 240 ASSSPNATPE QHVSSQSDRA SVDNLDLTT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435853.1 | 0.0 | PREDICTED: myb-like protein J | ||||
TrEMBL | A0A1S3X7X8 | 0.0 | A0A1S3X7X8_TOBAC; myb-like protein J | ||||
STRING | XP_009598702.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13677 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 2e-24 | MYB_related family protein |