PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435613.1
Common NameNtERF#193
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 259aa    MW: 27685.8 Da    PI: 9.7926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435613.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.5e-212777256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g+
  XP_016435613.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 77
                    6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.95E-202784No hitNo description
PROSITE profilePS5103224.0922784IPR001471AP2/ERF domain
SMARTSM003803.0E-392790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-322784IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-222784IPR016177DNA-binding domain
PfamPF008473.0E-142776IPR001471AP2/ERF domain
PRINTSPR003672.9E-112839IPR001471AP2/ERF domain
PRINTSPR003672.9E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPKQQGGAV AVTAAVGKVN GISKEVHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAAKAYDAA AREFRGAKAK TNFPPPDEEN LKIAQNNLGV KINKNINDDN NRSPSQSSTV  120
ESSSRDGLSP AVMVDSSPLD LSLGVKFPFQ NHQFRTSPIS GGFSGCGFTG ATPAVNHHMY  180
YLEALARAGV INLEKHQQRK TVDFLGGNGG HGGSSGGSGS GTQSESDSSS VIDFMRNDVK  240
PPTRTTLNLD LNFPPPENV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-222784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690810.0AB669081.1 Nicotiana tabacum NtERF#193 mRNA for ethylene response factor #193, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311661.10.0ethylene-responsive transcription factor 9-like
RefseqXP_009760120.10.0PREDICTED: ethylene-responsive transcription factor 9-like
RefseqXP_016435613.10.0PREDICTED: ethylene-responsive transcription factor 9-like isoform X1
TrEMBLA0A1U7VE740.0A0A1U7VE74_NICSY; ethylene-responsive transcription factor 9-like
TrEMBLR4WAJ90.0R4WAJ9_TOBAC; Ethylene response factor #193
STRINGXP_009760120.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-27erf domain protein 9
Publications ? help Back to Top
  1. Ogata T,Kida Y,Tochigi M,Matsushita Y
    Analysis of the cell death-inducing ability of the ethylene response factors in group VIII of the AP2/ERF family.
    Plant Sci., 2013. 209: p. 12-23
    [PMID:23759099]