PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435533.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 932aa    MW: 103318 Da    PI: 6.6052
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   +++
  XP_016435533.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI--WNE 218
                     99*****************************85545444..8************************************************..888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_016435533.1 219 KNQLFLGIRRA 229
                     9999****997 PP
2Auxin_resp117.31.3e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPr+++s+Fvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_016435533.1 254 AAHAAATNSRFTIFYNPRSCPSDFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-21127223No hitNo description
SMARTSM010192.1E-24128230IPR003340B3 DNA binding domain
PfamPF023628.4E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365128230IPR003340B3 DNA binding domain
PfamPF065078.2E-34254337IPR010525Auxin response factor
SuperFamilySSF542775.43E-7793874No hitNo description
PROSITE profilePS5174523.446799883IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MRLSSAGSNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
AEAHIPNYPS LAPQLICQLH NVTMHADMET DEVYAQMTLQ PLSPEEQKEA SFLPLDLGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPVQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SIIFIWNEKN QLFLGIRRAN RSQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RSCPSDFVVP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEVEPL  360
TTFPMYPSPF PLRLKRSWPP GFPALSGTRI RPLSPSHCFI CLKLRVTLRE LCELDLIVFQ  420
CFVFSHEGMK DDDMVMNPMM WLRDVGDGGT QSINFQGIGV TPWMQPRIDV PIGGMQMDIY  480
QAMAAGALQD LRSVDPSKQA LTSLLQLQQS NGVTNSTSGL LYPQLFQQSQ GQTAFLPSMA  540
QGQSQVQPVS QPHIFQQQML HQNSSTTIHQ QQQQSPLEQR PPPQQQQAIR QLDSSSQSQQ  600
TSLQAFCSTQ QESFTDTNVN HSTNSIVNPL HSLSGAVTRD EPSQLVSVPR SSSLLSPTGW  660
PPKRVAVDPV LPSASSQRMS PFIDQPGTPN KNVSQNALSL PTFPGRDCPV GQEGNNDLHN  720
HLLFGFNIDS PSLMQSDMRS LRGVGSDCES ANVPFASSNY LSNAGNDFAQ NPVMALSGCI  780
NVPGFTQTSE NAGQESPHNT FVKVYKSGSF GRSLDITKFS SYHELRSELA RMFGLEGLLE  840
DPLRSGWQLV FVDRENDVLL LGDDPWPEFV NSVWCIKILS PHDVQQMGKQ GLELLNSVSM  900
SKSSNNSCDD FANRSESRNM ASGIMSVATL DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592035851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435533.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3X7310.0A0A1S3X731_TOBAC; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]