PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016435093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 429aa MW: 49555.9 Da PI: 6.6651 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.4 | 1.7e-11 | 66 | 144 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+e+A+ GFsv+k++s+k+ + t++C + r+ + ++ + +Cka+++ ++++g w+ +k++ +HnH+l p XP_016435093.1 66 FYKEHARLKGFSVVKRNSNKK-GGDIASYVTYCCDRARIRKINFTT----------KSNNCKARVVAVLDDSGCWRDSKVVYDHNHDLLP 144 9***************99998.555578889***999999887666..........7889***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-9 | 66 | 144 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.3E-26 | 236 | 321 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MTSDDSLLNE YEWADVDSYG SFNNDVHLDD DDEEPDGEYY GEADNDEGAG PISGMQFSDK 60 DSLFAFYKEH ARLKGFSVVK RNSNKKGGDI ASYVTYCCDR ARIRKINFTT KSNNCKARVV 120 AVLDDSGCWR DSKVVYDHNH DLLPSISRLM AGHRSVCDSL KRDLVAHNRS GIRPSKNIRL 180 VELQRGGSQN LGCTPKDCRN FILKSRNFEM QEGDAQSLLN FFREMQAAYE KFYDAICFDT 240 TYLVNRYNMP CATFVGINHH RQSILLGYAL MSHEDIDSYK LVFRIWLEAI GNVHPDAIIT 300 DQCQSIKPAI TEVMPNTIHR CKGMHAFFDE YITRQSTLKM FVNQYELAIR FKHEKELEAK 360 YRSKGFQIVC ESMFKWEEQA IQCYTRTVYE FFKTQLRKFY HCEVSSPGDH QVVPGIEKFI 420 VSDYSVIKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435093.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3X5V6 | 0.0 | A0A1S3X5V6_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009591584.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-36 | FAR1 family protein |