PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435055.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 36956.1 Da    PI: 4.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-112572971055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_016435055.1 257 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVQYVKFLQ 297
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14247312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-12256301No hitNo description
PfamPF000101.6E-8257297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPVASISGE WSSFSGMCLA DEADFMAQLL GNCSLPNELP CSSNFGVSPA YWTGHESNMN  60
MGGAREVSVY SSNDTNNSMY TDGSSLLFSP PSHENYYSSH SRPILMRNDS SITMEHGLVD  120
TNNPSEADDF LNQDVSNDSM EFDENMPEAA LNGKGLQLGR TDYEQFSEDK MDSPSESSKK  180
RSRLHGLGHV PKNKRSAKLE KDLKSGEMDG KNKVVLQRQN STISCCSEDE SNVSHMLTRK  240
TRASRGSATD PQSLYARKRR ERINERLRTL QTLIPNGTKV DISTMLEEAV QYVKFLQLQI  300
KLLSSDDLWM YSPIAYNGMD LGLDLRIDIP K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755222e-35HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435055.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A1S3X4Z40.0A0A1S3X4Z4_TOBAC; transcription factor bHLH139-like
STRINGXP_009602073.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-51bHLH family protein