PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016434825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 350aa MW: 39924.3 Da PI: 8.0463 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.7 | 3e-40 | 102 | 250 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...... 73 a kkdrhski T+ g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+ el++ s + sec XP_016434825.1 102 AYKKDRHSKINTAHGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKCAVNELVQGinkencatanigaistcS--TTSECevvsgi 194 679*************************************************************999998888887776432..33456555553 PP TCP 74 eaesssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekm 130 ++++ + +++s++ + ++ k +k ++a +++ +akesr++arararert+ k+ XP_016434825.1 195 DESTTTNDI-QKQSNRGKVGEKkKANKLVRRA-AFNPVAKESRKQARARARERTKIKK 250 223333333.3444444444441445555554.4899999**************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 34.218 | 104 | 162 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.5E-44 | 104 | 250 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.477 | 232 | 249 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MYPSSNSCNY SLNISSSNNL FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ QQQQQLLTTP 60 DHYMAADSNK DTVISSTNQD PEEVELQGRC KNKKGDNKRR VAYKKDRHSK INTAHGPRDR 120 RMRLSLDVAR KFFNLQDLLG FDKASKTVEW LLTKSKCAVN ELVQGINKEN CATANIGAIS 180 TCSTTSECEV VSGIDESTTT NDIQKQSNRG KVGEKKKANK LVRRAAFNPV AKESRKQARA 240 RARERTKIKK SFLNIGDQSM AADDLKRLGC WSLFETGEES GIQGTNHQIE EHTTHHEEPL 300 LGTNENVDDC NLVVTGNWNP YTIFNYHHST EISHEQQFTN FQFSGKFWEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ194953 | 0.0 | FJ194953.1 Nicotiana tabacum TCP1 protein-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787900.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
Refseq | XP_016434825.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A1S3X4A5 | 0.0 | A0A1S3X4A5_TOBAC; transcription factor TCP12-like | ||||
TrEMBL | A0A1U7XN35 | 0.0 | A0A1U7XN35_NICSY; transcription factor TCP12-like | ||||
STRING | XP_009787900.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-29 | TCP family protein |