PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434103.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 876aa    MW: 96373.4 Da    PI: 6.3922
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_016434103.1 17 KYVRYTPEQVEALERLYHDCPKPTSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START49.99.6e-17161255295
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W +++++++ l+v+ ++  g+++l 
  XP_016434103.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDALNVLPTAngGTIELL 254
                     789*******************************************************.8888888888***************99988777665 PP

                     E CS
           START  95 v 95 
                     +
  XP_016434103.1 255 Y 255
                     5 PP
3START126.53.3e-4025840762205
                     HHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSE CS
           START  62 veellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpS 150
                     v+e+l+d++ W +++++++ l+v+ ++  g+++l +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpS
  XP_016434103.1 258 VAEILKDRPSWFRDCRAVDALNVLPTAngGTIELLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPS 352
                     789999999****************9999************************************************99988899********** PP

                     EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     g+li+p+++g+s +++v+h++l++++++++lr+l++s+++ ++kt+va+l+++++
  XP_016434103.1 353 GYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSAVLAQKTTVAALRYLRQ 407
                     **************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371276IPR001356Homeobox domain
SMARTSM003897.4E-161480IPR001356Homeobox domain
SuperFamilySSF466891.33E-161680IPR009057Homeodomain-like
CDDcd000861.05E-161777No hitNo description
PfamPF000463.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-181975IPR009057Homeodomain-like
CDDcd146861.21E-669108No hitNo description
PROSITE profilePS5084824.775151417IPR002913START domain
CDDcd088751.02E-72155409No hitNo description
SuperFamilySSF559618.1E-8159259No hitNo description
Gene3DG3DSA:3.30.530.205.3E-21160228IPR023393START-like domain
SMARTSM002341.1E-33160408IPR002913START domain
PfamPF018526.1E-14161257IPR002913START domain
SuperFamilySSF559612.33E-26257410No hitNo description
PfamPF018521.7E-37258407IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-21262403IPR023393START-like domain
PfamPF086703.4E-50733875IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MASCKDGKTS SVLDNGKYVR YTPEQVEALE RLYHDCPKPT SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSS QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDAL  240
NVLPTANGGT IELLYMQVAE ILKDRPSWFR DCRAVDALNV LPTANGGTIE LLYMQLYAPT  300
TLAPARDFWL LRYTTVMDDG SLVVCERSLG NTQNGPSMPP VQNFVRAEIL PSGYLIRPCE  360
GGGSIIHIVD HMNLEAWSVP EVLRPLYESS AVLAQKTTVA ALRYLRQIAQ EVSQTNVTNW  420
GRRPAALRAL SQRLSRGFNE ALNGLTDEGW SMLGSDGMDD ITILVNSSPD KLMGLNLSFA  480
NGFSSLSNAV MCAKASMLLQ NVPPAILLRF LREHRSEWAD NNIDAYSAAA IKVGPCCLPG  540
AQVGNFGGQV ILPLAHTVEH EELLEVIKLE GVGHSPEDTI MPRDMFLLQL CSGMDENAVG  600
TSAELIFAPI DASFADDAPL LPSGFRIISL ESGKESSSPN RTLDLTSALE TGPAENKVGN  660
DLHTNGGTSR SVMTIAFQFA FESHMQENVA SMARQYVRSI ISSVQRVALA LSPSHLGSHG  720
GLRLPLGTPE AHTLARWICQ SYRCFLGVEL LKSIAEGSDS ILKSLWHHSD AIICCSAKAL  780
PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGKKNLCT EFPQIMQQGF ACLQGGICLS  840
SMSRPISYER AVAWKVMNEE DSPHCICFMF VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434103.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
RefseqXP_016434104.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S3X3300.0A0A1S3X330_TOBAC; homeobox-leucine zipper protein ATHB-15-like isoform X1
STRINGXP_009593967.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]