PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433628.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 909aa    MW: 100516 Da    PI: 7.3922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18322422199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_016433628.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 414
                     99**************************555567778***************9989999999***9.********************876.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+++++++
  XP_016433628.1 415 LLMGFRKA 422
                     88888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-29314427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100173.14E-22320421No hitNo description
SMARTSM010191.9E-20322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152322423IPR003340B3 DNA binding domain
PfamPF023626.8E-16322422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.054586636IPR011124Zinc finger, CW-type
PfamPF074961.5E-9591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MDSKICMNGV CGATSSIEWK KGWPLKSGEF AYLCDKCGTA YEQLGFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCVG CARSCQLHAT PNHVKAKAFG TSNSNSVGET  120
PSTSLGSQMN GSEPKKREGS DGVDPVLVLP HQNGNTNKPI GQIKMEEAFH PAGESGCTFS  180
SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSPNTKL FPATVDEGDL  240
NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSMNLSS  480
KHFNSGDFSW YLTEKNEGRN ADGTFSPSMP VSDRKRSRNI GSKSKRLLID SDEALELKLS  540
WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRFSGEQE QWAQCDNCFK  600
WRRLPADYLL PPQWTCQDNI FYHSRCSCSV PDDLTSRELE YLLKMDKDLK KRRNAAGQRT  660
AQAHDSSDLD SHANGTGVAG DVRERGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEAD  780
PSDRERSGSE TLARGHSSNQ LQKLPETSKS QLDLNCHPNR EDTGSSHLSM MSLLQQASLP  840
LETYLRQNGL TSLVSEQQGS SGSQGLPPDT RESEVRIHED QCFASTSQEQ EQEGTKENSE  900
PDQSGKDNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-683004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1645652DKDLKKRR
2730741KRRFKTLMMRKK
3730743KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547450.0AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433628.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S3X1Q90.0A0A1S3X1Q9_TOBAC; B3 domain-containing transcription repressor VAL2-like isoform X1
STRINGXP_009589564.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]