PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433539.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 546aa    MW: 62099.5 Da    PI: 9.3155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095483505123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+++F++   L  H r+H
  XP_016433539.1 483 HECPFCNRMFKSGQALGGHKRSH 505
                     78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6936IPR007087Zinc finger, C2H2
SMARTSM003550.78931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139120.00111131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533100127IPR007087Zinc finger, C2H2
SMARTSM003550.075100122IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.21E-6101122No hitNo description
PfamPF139121.7E-7102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-6403427No hitNo description
PfamPF139121.2E-6408427IPR007087Zinc finger, C2H2
SMARTSM00355230408428IPR015880Zinc finger, C2H2-like
PfamPF139126.6E-9483505IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452483505IPR007087Zinc finger, C2H2
SMARTSM003550.028483505IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280485505IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEEDQDLKYF CKLCNKRYPC GKSFGGHMRS HVLSNSAKLE EKVELKHKKV QSWINLGKKN  60
SKRDHKSKFE LGENSGYGLR DNPKKTWRAV DSRSPLPQEN VCQQCGKVFQ SLKALCGHMA  120
CHSGKDKGSK DDHSWTSENK NIAMDSNSDT EAEEPIMLRS RSKIKRYNKS KSSSFCLVNN  180
RSFSSSVSEI DEQDQEEVAK CLMMLSMDSG KWNGVINSVV ESSDNNSVVF ESKSSSVDMR  240
ISRKDSLKCA DNVDGTPRSK KKADRNLTLN VLSAEVQSEN SDSGYFLDDY MNVESDASVD  300
EFHRKHNYQR NTSNKSHGVW CDESRIDEGK DLNRMKKCIT ELRNASSKDY KYDSYGMTSN  360
LVKCESRKRN KDSSYHSELG NESFNNKKIN LGLKGAEGIK HTQKKKKYEC FNCKKTFSSY  420
QALGGHRPCT KKTNAYIESK YETNENNRDA DRETFSNKKP VAHARDLSYN PEKKMKAKKF  480
KGHECPFCNR MFKSGQALGG HKRSHFITGS QYQASAFKRE VVDLLDLNLP APVEDVNGEP  540
AFVSSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433539.10.0PREDICTED: uncharacterized protein LOC107760031
TrEMBLA0A1S3X0U50.0A0A1S3X0U5_TOBAC; uncharacterized protein LOC107760031
STRINGXP_009590895.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-38C2H2-like zinc finger protein