PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016433373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 279aa MW: 32692.5 Da PI: 10.3652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.8 | 7.6e-15 | 8 | 51 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ +v + R ++++KKAeELS+LC++e+ +++fs++ k ey XP_016433373.1 8 ERGSSVVLQERMETLFKKAEELSILCGVEIGIVVFSPHKKNAEY 51 566789999***************************98776555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.783 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-5 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.97E-13 | 7 | 55 | No hit | No description |
Pfam | PF00319 | 1.9E-13 | 7 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-15 | 7 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-5 | 17 | 32 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-5 | 32 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MARKNINERG SSVVLQERME TLFKKAEELS ILCGVEIGIV VFSPHKKNAE YEWPSRDKFK 60 QLLMRFLDKP LVERLKKLTT HEEFLRKEIE KNVRKIDPQK TEEKEMEQLF KQLYHGKKTV 120 FELDRRQLIG VRNLAIKAKE KAVERRIRLQ LQDQRLWLPI DHVPFLVASL NVPDQRLQLP 180 IDHVPFLVAS LNVPDQRLQL PIDPIPLRVA PLNVHDQRQI LQLPIDHVPL RVATLNVQDQ 240 RLHLPIDDPL ALRLAPPNVQ YQRLQLPIVD PLKLRLAPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016433373.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S3X107 | 0.0 | A0A1S3X107_TOBAC; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_009796922.1 | 1e-178 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-14 | M-type_MADS family protein |