PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016433124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 303aa MW: 33225.8 Da PI: 4.7297 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.2 | 3.5e-16 | 162 | 198 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp+g++tLCnaCGl+++ kg+ XP_016433124.1 162 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 198 *****99999***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 8.7E-15 | 93 | 134 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.709 | 93 | 135 | IPR010402 | CCT domain |
SMART | SM00401 | 6.5E-11 | 156 | 209 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-12 | 160 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.6E-15 | 160 | 202 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.67E-16 | 161 | 208 | No hit | No description |
Pfam | PF00320 | 1.4E-13 | 162 | 197 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 162 | 189 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEAANSRAIG FDEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQQV QAILLLLGGS 60 DMASYVPSSH SLALQTTKSV DNDAPIRPNI SRRIASLIRF REKRKERCFE KKVRYTCRKE 120 VAQRMHRKNG QFASLKDGEK TYAGNIDSGD SIPHHEPTLR RCQHCGISES ETPAMRRGPS 180 GPRTLCNACG LMWANKGMLR DITKGGRGTP FDKSEPRTPD IKLPTVAPES SDQKQYQEDM 240 REAAENFVDN SPVGIGSSSA DIDEEQDNLD ELANASGTEF EIPASFDEQI GIDSHMGADW 300 PGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 5e-38 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016433124.1 | 0.0 | PREDICTED: GATA transcription factor 19-like isoform X4 | ||||
TrEMBL | A0A1S3WZR2 | 0.0 | A0A1S3WZR2_TOBAC; GATA transcription factor 19-like isoform X4 | ||||
STRING | XP_009609384.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-37 | ZIM-like 1 |