PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433122.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 346aa    MW: 37776 Da    PI: 4.7088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.2e-16205241135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_016433122.1 205 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 241
                     *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.1E-14136177IPR010402CCT domain
PROSITE profilePS5101712.709136178IPR010402CCT domain
SMARTSM004016.5E-11199252IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-15203245IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-12203250No hitNo description
CDDcd002021.25E-15204251No hitNo description
PfamPF003201.6E-13205240IPR000679Zinc finger, GATA-type
PROSITE patternPS003440205232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAANSRAIG FDEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQQV CSSMPPLAAS  60
PVVDSDGRVL AAMPMPSRRT SELTISFEGQ LYVQAILLLL GGSDMASYVP SSHSLALQTT  120
KSVDNDAPIR PNISRRIASL IRFREKRKER CFEKKVRYTC RKEVAQRMHR KNGQFASLKD  180
GEKTYAGNID SGDSIPHHEP TLRRCQHCGI SESETPAMRR GPSGPRTLCN ACGLMWANKG  240
MLRDITKGGR GTPFDKSEPR TPDIKLPTVA PESSDQKQYQ EDMREAAENF VDNSPVGIGS  300
SSADIDEEQD NLDELANASG TEFEIPASFD EQIGIDSHMG ADWPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-38HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433122.10.0PREDICTED: GATA transcription factor 19-like isoform X2
SwissprotQ5Z4U54e-49GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1S3WZQ50.0A0A1S3WZQ5_TOBAC; GATA transcription factor 19-like isoform X2
STRINGXP_009609384.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.29e-41ZIM-LIKE 2