PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 508aa MW: 55963.8 Da PI: 6.4203 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.9e-30 | 234 | 293 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_016432911.1 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 293 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 219 | 295 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-28 | 227 | 295 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.161 | 229 | 295 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 234 | 294 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-27 | 235 | 293 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MENNKSEGDE MEIDLSLKLD SREEEIEPLN EENQSSEVNA KTQGKDQELS KAETSGSSKT 60 EELSMLQMEM NKMKEENKFL RKAVEQTMKD YYDLQAKFTT IHQNNHEKDH RNFLSLSGND 120 DITEGLTRSP KILDIKNRTL SQTSQELDDI MDGDQLGLSL TLVSSNSSTT ASRLVESTEE 180 ERKEKIKEDN AAITTQIQNK GNFQGGLTSH VTTASPPNRK ARVSVRARCE SATMNDGCQW 240 RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA 300 MASTTSAAAS FMLVDSSINP LLNGNINQAV NFPNYHNHAP NYSHHIPNSS SSSSPYFSNL 360 RNNILNSSDP NIVLDLTKNI SNDHHHQFPF VSSSSNSSAT ATTNQLGQYS WMAKLPSNNY 420 EGNSSTIVNN LFTGPKLLGD HHHQNSSSNP ILAENMSVIA SDPKFRVAVA AAISSLINKD 480 QNHPISTAMP SSLGDRGDSN GGSVRHSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 221 | 297 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 3e-53 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 3e-53 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432911.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 | ||||
Swissprot | Q9C9F0 | 2e-74 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A1S3WZE7 | 0.0 | A0A1S3WZE7_TOBAC; probable WRKY transcription factor 9 | ||||
STRING | XP_009591124.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7287 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-66 | WRKY DNA-binding protein 9 |