PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 45668.2 Da PI: 5.2813 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 4e-52 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ +k++++ ++++e+d+yk+ePw+L + ++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_016432498.1 32 LAPGFRFHPTDEELVRYYLRRKACSKPFRF-QAVSEIDVYKSEPWELAEysSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRPVR 125 579*************************99.88**************84346777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++++g+kktLvf++grap+g++t+Wvmheyrl XP_016432498.1 126 H-KSQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 159 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-62 | 25 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.036 | 32 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-28 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MEQEGALVIV PAAVPVTTAT PKRAVAPPPT SLAPGFRFHP TDEELVRYYL RRKACSKPFR 60 FQAVSEIDVY KSEPWELAEY SSLKTRDLEW YFFSPVDRKY GNGSRLNRAT GKGYWKATGK 120 DRPVRHKSQT IGMKKTLVFH SGRAPDGKRT NWVMHEYRLT DEELERAGVV QDAFVLCRIF 180 QKSGLGPPNG DRYAPFIEEE WDDDTALLVP GGETEDDAAN GDEARVEGND LDQDARHKAP 240 PRQSENLLDP QPIPFICKRE RSPEDPEPLS LAQSKRSKRE DPSSSHANGS EDSTTSQQDP 300 PTTMMTTNYS PPSLLAFPLL EPLEPKESQP SNPPTFDSSN LEKSVPPGYL KFISNLENEI 360 LNVSMERETL KIEVMRAQAM INILQSRIDL LNKENEDLRR LVRGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-51 | 31 | 182 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-51 | 31 | 182 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF509867 | 0.0 | AF509867.1 Petunia x hybrida nam-like protein 4 (NH4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432498.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A1S3WXV3 | 0.0 | A0A1S3WXV3_TOBAC; NAC domain-containing protein 78-like | ||||
STRING | XP_009780872.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3140 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 5e-96 | NAC domain containing protein 52 |