PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 527aa MW: 60359 Da PI: 6.382 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 119 | 200 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++ l+ g ++lp +fa+ ++ ++ +l+++de+ r W++kl+ + + +r+ +++GW++F +n+LkegD +vF+++ ++e+ XP_016432345.1 119 TIKPYCLTYGYMYLPQQFANGL--SN-KKCDLIIRDERQRLWNLKLS-SDCNNRVRIGDGWRKFIVDNRLKEGDHIVFEVVTDEET 200 578999999*********9444..43.3348***************5.66667799***********************8876544 PP | |||||||
2 | B3 | 46.8 | 5.4e-15 | 274 | 355 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++ l+ g l+l +fa+ ++ ++ +l+++de+ r W++kl+ + +++r+ +++GW +F +n+LkegD +vF+++ ++e+ XP_016432345.1 274 TIKPYCLTYGYLYLAQQFANGL--SN-KKCDLIIRDERQRLWNLKLS-SDYKNRVRIGDGWCKFIADNRLKEGDRIVFEVVTDEET 355 578899999*********9444..43.3348***************5.777889*************************8876554 PP | |||||||
3 | B3 | 54.2 | 2.7e-17 | 408 | 497 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ ++ +++r+ +pk fa+e+g+++++ t+ ++d++ rs e++l y+ + g++++++ W++F+ an LkegD ++F+ +++++ +k++ XP_016432345.1 408 TVKLHHISKCRMHVPKLFARENGLSNRK-CTIAIRDSEQRSLEFRL-YSSSAGSTFIGGEWRKFCAANFLKEGDCIMFEIFA-KGEKPILKFY 497 4578999***************999765.5****************.9999999*************************544.7777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-18 | 113 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-18 | 113 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.084 | 115 | 211 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.06E-14 | 115 | 193 | No hit | No description |
SMART | SM01019 | 3.1E-13 | 116 | 208 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-15 | 119 | 200 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.47E-15 | 268 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-16 | 268 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.632 | 270 | 366 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.23E-10 | 270 | 348 | No hit | No description |
SMART | SM01019 | 1.1E-7 | 271 | 363 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 274 | 355 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-16 | 401 | 495 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-16 | 404 | 496 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.644 | 404 | 502 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-9 | 405 | 500 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 408 | 497 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.84E-15 | 412 | 498 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MLVFRYEGNM EFEVMIFDSS HCNREYAEYL QEEEAAATHT FGEASKNFEF EDTNNYASIP 60 SGDRLYQSSP STSCYLSHSR NTDDVIEIPS PGIKLSDEDS SRAEAATDKH VGHSHFVCTI 120 KPYCLTYGYM YLPQQFANGL SNKKCDLIIR DERQRLWNLK LSSDCNNRVR IGDGWRKFIV 180 DNRLKEGDHI VFEVVTDEET SIWKFHVVTT AETPMRKFQG GHGFEAWKQP LAEIPSPDDV 240 IEIPSPCIKS SDEDFSHAEA ATDKHVGHSH FVCTIKPYCL TYGYLYLAQQ FANGLSNKKC 300 DLIIRDERQR LWNLKLSSDY KNRVRIGDGW CKFIADNRLK EGDRIVFEVV TDEETSIWKF 360 HAVTNAETPM RKFQEKPEPN IMSSYKAFPD VEAAKDMPLS RPDHFISTVK LHHISKCRMH 420 VPKLFARENG LSNRKCTIAI RDSEQRSLEF RLYSSSAGST FIGGEWRKFC AANFLKEGDC 480 IMFEIFAKGE KPILKFYDLR ANASLHPEEA KPNLDAERVS TQGLGIG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432345.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X4 | ||||
Refseq | XP_016432346.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X4 | ||||
TrEMBL | A0A1S3WXD1 | 0.0 | A0A1S3WXD1_TOBAC; B3 domain-containing protein REM17-like isoform X4 | ||||
STRING | XP_009590757.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 2e-22 | B3 family protein |