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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015903040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 34305.9 Da PI: 6.1809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.9e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ Ed++l +++k++G g W+ +++ g++R++k+c++rw++yl XP_015903040.1 15 RGAWSSMEDQILTEYIKLHGEGKWRGLPQRAGLRRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ +lG++ W++Ia +++ gRt++++k++w++ XP_015903040.1 68 RGNITPEEEDLIIRLHSLLGNR-WALIAGRLP-GRTDNEVKNYWHT 111 7999******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.274 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.992 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.84E-11 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGRKPCCSKE AGLNRGAWSS MEDQILTEYI KLHGEGKWRG LPQRAGLRRC GKSCRLRWLN 60 YLRPTIKRGN ITPEEEDLII RLHSLLGNRW ALIAGRLPGR TDNEVKNYWH TKIAKTTKAQ 120 QIPNVTTNQP ISEAAQLHST AAIKPRVVRT KATRCTKAVI IPFLAQDGLV HNNEPAAAVA 180 AGPTTSRSSM VDHDDEYGKT SAGTESLLSP LMMISEKENE MSCSFIRDFD FELEEHLLSD 240 FFNEDFVGFP SDFENRVEIN DASRKSEEKL LLTSEDELLD CSDLQTMAAL IDSDLDWLQV 300 LSKTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 13 | 115 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015903040.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015903040.1 | 0.0 | transcription factor TT2-like | ||||
TrEMBL | A0A2N9ETC3 | 8e-89 | A0A2N9ETC3_FAGSY; Uncharacterized protein | ||||
STRING | XP_008228205.1 | 1e-86 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-59 | myb domain protein 3 |