PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015902716.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 673aa MW: 77989.9 Da PI: 9.3595

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015902716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.2	2.4e-22	59	144	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA++vGF +r+sk +k ++ ++++rtf C +eg+re++k++ + +++raetr gC a++k++++++gk+++t++ +H+H XP_015902716.1 59 NFYNAYAYKVGFGIRRSKGHKD-QSIKMKNRTFSCCCEGFREKDKRD-INVKSHRAETRFGCLARMKINLDQTGKYRITDFIAQHTHV 144 6**************99998.6667*************999.99999********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-18	59	144	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.175	429	465	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-8	440	467	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.4E-6	442	464	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MDNDSYVSKD INMLLEDEDK KDEGNITGQE KKEAIHSKIL DEMIPKVGIE FKSEDKAYNF 60 YNAYAYKVGF GIRRSKGHKD QSIKMKNRTF SCCCEGFREK DKRDINVKSH RAETRFGCLA 120 RMKINLDQTG KYRITDFIAQ HTHVTSTPSK SHLHRSQRKL TFVQAAEIDI ADSSGIAPKA 180 SLELMAKRVG GYENLGFIRD DYKNYLKTKR TIQMKVGETA KHLSGVFAKF REFAKDFSSC 240 IYDYEEEQEF FLAWNAMLEK YDLKDNDWLI RMFDLRKKWA LVYEKYDLKD NDWLIRMFDL 300 RKKWALVYGR ETFCADMTTT QRSESMNNVI KNSVSYQHNL LRFFEHFQRL TEDCCYEELK 360 ADFKATQSTP SLSFPVEILK DAASIYTPTG FKVFQDELCK AYNCAMQIFD HIGTVTEYKL 420 TNHKKQFQHT VRYDFSDNTV ICSCRKFEFT GILCSHALKV LSSKDIKKIF IQYILKRWTK 480 SAKLGNSEFV FANTINEDPK VSLARCYKDL CRLQTQVATK AAETEETYKI ARTALAKILE 540 DVDAYLKDNN IGKSISKIVE TTTIPSASEK IKGIKSKKRV RGKSTRPRNA LERVRKKKNV 600 ALGEPSQQQS HASEIADNDV HAIPQEYQGF GFNGNHFIDN NKNIYKFDTA NVSSTKTARY 660 LWKLGFREDI EGV

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MDNDSYVSKD INMLLEDEDK KDEGNITGQE KKEAIHSKIL DEMIPKVGIE FKSEDKAYNF  60
YNAYAYKVGF GIRRSKGHKD QSIKMKNRTF SCCCEGFREK DKRDINVKSH RAETRFGCLA  120
RMKINLDQTG KYRITDFIAQ HTHVTSTPSK SHLHRSQRKL TFVQAAEIDI ADSSGIAPKA  180
SLELMAKRVG GYENLGFIRD DYKNYLKTKR TIQMKVGETA KHLSGVFAKF REFAKDFSSC  240
IYDYEEEQEF FLAWNAMLEK YDLKDNDWLI RMFDLRKKWA LVYEKYDLKD NDWLIRMFDL  300
RKKWALVYGR ETFCADMTTT QRSESMNNVI KNSVSYQHNL LRFFEHFQRL TEDCCYEELK  360
ADFKATQSTP SLSFPVEILK DAASIYTPTG FKVFQDELCK AYNCAMQIFD HIGTVTEYKL  420
TNHKKQFQHT VRYDFSDNTV ICSCRKFEFT GILCSHALKV LSSKDIKKIF IQYILKRWTK  480
SAKLGNSEFV FANTINEDPK VSLARCYKDL CRLQTQVATK AAETEETYKI ARTALAKILE  540
DVDAYLKDNN IGKSISKIVE TTTIPSASEK IKGIKSKKRV RGKSTRPRNA LERVRKKKNV  600
ALGEPSQQQS HASEIADNDV HAIPQEYQGF GFNGNHFIDN NKNIYKFDTA NVSSTKTARY  660
LWKLGFREDI EGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	576	597	KKRVRGKSTRPRNALERVRKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015902716.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015902716.1	0.0	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-37	far-red elongated hypocotyls 3