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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 263aa MW: 30052.8 Da PI: 8.8329 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.1 | 1.4e-12 | 31 | 113 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ rl lp +f++++++ e s tl+ sg s + k+ +++ +++++++GW++F k+n L +f+ ++++g+++f v++f+ XP_015902671.1 31 KKSNERLLLPSEFLKHISN--ELSDRATLKACSGCSRTAKV--SNTWKGIYIEDGWQQFLKDNSLGKDEFLRISYEGNMCF--SVQIFE 113 467889********77753..47789***************..99999*********************************..998885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-18 | 19 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-16 | 19 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.39E-11 | 22 | 112 | No hit | No description |
PROSITE profile | PS50863 | 8.98 | 22 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-4 | 24 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 30 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE pattern | PS00354 | 0 | 157 | 168 | IPR000637 | HMG-I/HMG-Y, DNA-binding, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MERRKMENGN KEKEILEEDN RPSFCTIVFS KKSNERLLLP SEFLKHISNE LSDRATLKAC 60 SGCSRTAKVS NTWKGIYIED GWQQFLKDNS LGKDEFLRIS YEGNMCFSVQ IFEMNGCERM 120 NVRRTRTDHQ SPPTSSKRPQ DSTNVPHFKT HQNSASTTVK RPRGRPRKYP LPTANHHLSK 180 SCEDDSGKSL ISCQSNKPNG FIDGKGKEIK TEEADDHRVH DLSKEDMAID WKAAESFKSK 240 YPYFTCSVQG RYQVPCCSGL LSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 167 | KRPRGRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902671.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902671.1 | 0.0 | B3 domain-containing protein At5g18090-like isoform X2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 2e-18 | B3 family protein |