PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902627.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 500aa MW: 55070.9 Da PI: 6.7565 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.9 | 7.6e-32 | 135 | 192 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k XP_015902627.1 135 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 192 7****************************************.***************85 PP | |||||||
2 | WRKY | 106.5 | 1.4e-33 | 310 | 368 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ XP_015902627.1 310 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 368 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.26E-24 | 133 | 193 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-26 | 133 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-34 | 134 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.446 | 135 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 135 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-37 | 295 | 370 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-29 | 302 | 370 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 305 | 370 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 310 | 369 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 311 | 368 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MAHGFLGSTT YSAVSVCSDL SDSSKRDSSC FEFRPHARSN MVTTDPYNQR SEQSVQVQGQ 60 CQSQSLVSLP MVKSEMAVTS SELSLSAPVN IVASGASAPA ESDLDELNQR GNLNSGVQTA 120 QFDHKGNGPS PVTSEDGYNW RKYGQKHVKG SEFPRSYYKC THPNCEVKKL FERSHDGQIT 180 EIIYKGTHDH PKPQPSRRYN TGTIMSSQEE RSDKFSSLTG RDDKSSSLYG QMTNTNEPNG 240 TPDVSPIAAI DDVVEGTGLL SNRINDEGDD DDPFSKRRKM DIGGIDVTPV VKPIREPRVV 300 VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT 360 YEGKHNHDVP TARTSSHDTA GPMTVSVPTR IRSEETDNIS LDLGVGITCA AENRPTDHLQ 420 TVHSELVESQ SQNSNLKLVQ ANPVSSYYGV LNSGLNQYGS RENMSEGHSI EIPALNRSSY 480 PYPQNMGRVL TVVHPKAVLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-37 | 135 | 370 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-37 | 135 | 370 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902627.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902623.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_024923737.1 | 0.0 | probable WRKY transcription factor 20 isoform X3 | ||||
Refseq | XP_024923738.1 | 0.0 | probable WRKY transcription factor 20 isoform X4 | ||||
Swissprot | Q93WV0 | 1e-180 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A386IPT4 | 0.0 | A0A386IPT4_ZIZJJ; WRKY transcription factor 66 (Fragment) | ||||
STRING | XP_008227105.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-175 | WRKY family protein |