PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902625.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 583aa    MW: 63795.6 Da    PI: 6.4116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.4e-32225282260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_015902625.1 225 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 282
                     7****************************************.***************85 PP
2WRKY106.21.7e-33400458159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_015902625.1 400 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 458
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-24223283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-26223283IPR003657WRKY domain
SMARTSM007747.5E-34224282IPR003657WRKY domain
PfamPF031062.4E-24225281IPR003657WRKY domain
PROSITE profilePS5081122.446225283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37385460IPR003657WRKY domain
SuperFamilySSF1182902.35E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.825395460IPR003657WRKY domain
SMARTSM007743.1E-39400459IPR003657WRKY domain
PfamPF031063.5E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEATTLDQLD LQIRNSEDVD PGRSDFLDPA TGSGGAKYKL YSPAKLPISR SPCLTIPPGL  60
SPTSFLESPV LLSNMKAEPS PTTGSFTKPQ MAHGFLGSTT YSAVSVCSDL SDSSKRDSSC  120
FEFRPHARSN MVTTDPYNQR SEQSVQVQGQ CQSQSLVSLP MVKSEMAVTS SELSLSAPVN  180
IVASGASAPA ESDLDELNQR GNLNSGVQTA QFDHKGNGPS PVTSEDGYNW RKYGQKHVKG  240
SEFPRSYYKC THPNCEVKKL FERSHDGQIT EIIYKGTHDH PKPQPSRRYN TGTIMSSQEE  300
RSDKFSSLTG RDDKSSSLYG QMTNTNEPNG TPDVSPIAAI DDVVEGTGLL SNRINDEGDD  360
DDPFSKRRKM DIGGIDVTPV VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP  420
RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP TARTSSHDTA GPMTVSVPTR  480
IRSEETDNIS LDLGVGITCA AENRPTDHLQ TVHSELVESQ SQNSNLKLVQ ANPVSSYYGV  540
LNSGLNQYGS RENMSEGHSI EIPALNRSSY PYPQNMGRVL TGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36225460877Probable WRKY transcription factor 4
2lex_A1e-36225460877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902625.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902625.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A386IMV30.0A0A386IMV3_ZIZJJ; WRKY transcription factor 58
STRINGXP_008227105.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein