PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902575.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 278aa    MW: 31695.2 Da    PI: 7.2354
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.61.4e-102012381954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +e+  LA+++gLt++qV++WF N R +
  XP_015902575.1 201 FEHflHPYPSDSEKLTLASQTGLTKNQVSNWFINARVR 238
                     664459******************************98 PP
2BELL107.87e-3564134272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     ++e q+k+akL+ lleeV+ rY++y++q++ v++sFe++aglg+ak Yt+lAl+a+SrhF +L+dai+++i
  XP_015902575.1  64 KHEFQMKIAKLIALLEEVEGRYEKYYHQMKEVMASFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIVSHI 134
                     789*****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-234132IPR006563POX domain
PfamPF075262.9E-3256131IPR006563POX domain
PROSITE profilePS5007112.228179242IPR001356Homeobox domain
CDDcd000864.77E-12182243No hitNo description
SMARTSM003891.9E-10182246IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-28187248IPR009057Homeodomain-like
SuperFamilySSF466894.19E-18188250IPR009057Homeodomain-like
PfamPF059207.0E-18199238IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLLTNADSQA DSPRTGSVQK IAHFFSSFYR YCSKPYFFPA QIPLRFTSEL KAELCSSGVV  60
SADKHEFQMK IAKLIALLEE VEGRYEKYYH QMKEVMASFE MIAGLGAAKC YTALALQAMS  120
RHFCSLRDAI VSHINVERRK LLQDLPKIST GLSQLSLLDR ESRQNRMSLQ QLGIVQSQRQ  180
AWRPIRGLPE TSVAILRAWL FEHFLHPYPS DSEKLTLASQ TGLTKNQVSN WFINARVRLW  240
KPMIEEMYKE EFGDSSEDSN PLVSGSMTGE AVTDHEED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-18188246563Homeobox protein Meis2
3k2a_B7e-18188246563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902575.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD15e-97BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2P5EZK41e-140A0A2P5EZK4_TREOI; Homeodomain transcription factor
STRINGXP_010110018.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-99BEL1-like homeodomain 11