PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GATA | ||||||||
Protein Properties | Length: 294aa MW: 32511.8 Da PI: 8.3256 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.7 | 2.8e-17 | 221 | 255 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l XP_015902364.1 221 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 255 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.5E-14 | 215 | 269 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.147 | 215 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-15 | 216 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-13 | 219 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.98E-11 | 220 | 267 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 221 | 246 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.8E-15 | 221 | 255 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDFCRNVSVA GEHQQEQVIS PPCSKLSGLS TAATGLDDLF SAQNTEADVN LEWLSIFVED 60 CLSSKGNCLP PPTNIETTST TPKSSKALPL PLHLQKKSQQ NPTSSSSSLQ NLAVPGKARS 120 KRKRAVVPKN RTNPLTSWSN NLILQGQTLQ IPSSDPPLLK QAYWLADSEL FVPKKDENSS 180 LRSDEHEETG EEEADEDQKR IMVSKENLEC NNGQQPMPRR CTHCLAQRTP QWRAGPLGPK 240 TLCNACGVRY KSGRLLPEYR PAKSPTFVSY LHSNSHKKVM EMRMSLLSSI PSGE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902364.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902364.1 | 0.0 | GATA transcription factor 9-like | ||||
Refseq | XP_015902365.1 | 0.0 | GATA transcription factor 9-like | ||||
Refseq | XP_024923656.1 | 0.0 | GATA transcription factor 9-like | ||||
TrEMBL | A0A2I4DUI3 | 1e-121 | A0A2I4DUI3_JUGRE; GATA transcription factor 9-like | ||||
STRING | EOY11203 | 1e-118 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 2e-40 | GATA transcription factor 9 |