PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901920.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 287aa    MW: 32673.8 Da    PI: 4.4543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162969547
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
   XP_015901920.1 29 SEYEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 69
                     6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333119IPR017877Myb-like domain
SuperFamilySSF466892.05E-21679IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-5618IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-251975IPR009057Homeodomain-like
PROSITE profilePS5129426.3412074IPR017930Myb domain
SMARTSM007172.5E-142472IPR001005SANT/Myb domain
PfamPF002493.7E-142969IPR001005SANT/Myb domain
CDDcd001671.08E-103270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAGLLRCGKS CRLRWTNYLR PDLKRGLLSE YEEQMVIDLH AQLGNRWSKI ASHLPGRTDN  60
EIKNHWNTHI KKKLKKMGID PLTHKPIATV NEKPEPEKKE QEQEQSSETR NTSEIDQSKE  120
TETSFQSSSI TEAREEEKSM TSSFEPTTTT LEVLDGFCTD EVPLIEPHEI VVPCAPSSST  180
TSTSSSSSSS SFSSSNSSSN NFLEDLELPD FEWPSDYNNN NSNNNTNNNN NNINNMCLWD  240
EDFNIWDLLI NDDHIDGGDR KQSGHDDLPL NQCQRMVLDQ ESWAFIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2067440108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958316e-69BT095831.1 Soybean clone JCVI-FLGm-19P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901920.20.0transcription factor MYB20-like isoform X1
RefseqXP_024923480.10.0transcription factor MYB20-like isoform X2
SwissprotQ9C7U78e-65MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2N9HT741e-108A0A2N9HT74_FAGSY; Uncharacterized protein
STRINGEOY038981e-106(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.17e-65myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]