PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901828.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 398aa    MW: 42863.7 Da    PI: 10.2777
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1477164186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +  ++ + ++pk   qCk++++ ++k+yk +k     +  +  s++p++++l+
  XP_015901828.1  77 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVsGREDYAKTPKtdiQCKNRIDTVKKKYKLEKSKIAAG--GGPSKWPFYERLD 164
                     7*************************************855556555543339****************999987..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-2675166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEEDDEIQSH PSPGSGSPAS PRSNGRITVT VASAPPPQPP SQSPLTLALP IQQTTTRNGG  60
GGIGGGGGGG GGGREDCWSE GATSVLIDAW GERYLELSRG NLKQKHWKEV ADIVSGREDY  120
AKTPKTDIQC KNRIDTVKKK YKLEKSKIAA GGGPSKWPFY ERLDHLIGPT AKIAGPASHT  180
TPLAISYPQQ NQKVPLAIPV GVRGGASQFQ GQQRDQKHHH HHHQHQPVQS KSQKMQFRRR  240
GGGPIDSESS GDASPASTDS LPPEIYDRKR PRVVRDMGSN PARVGGASGG GLAATGGGRD  300
GGRDSKKGWG NAMKELTQAI LKFGEAYEQA ESSKLQQVVE MEKQRMKFAK ELELQRMQFF  360
MKTQLEISQL KHGRRGGIGN ASNHHSNANN NNNSDSSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901828.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-106ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P5F6R21e-164A0A2P5F6R2_TREOI; Trihelix transcription factor
STRINGVIT_09s0002g00720.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-87sequence-specific DNA binding transcription factors