PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901650.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 646aa MW: 73672 Da PI: 6.8159

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901650.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-5	28	112	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-25	227	322	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MDYTSEFTTN EVFKSKEALV EWTREVGRRN GLVIVIKTSD TGGNGRKPRI TFNCERGGNY 60 RKFKSTGIQK QKRTKIAGSK KCGCPFALKG QKLAAGDEWK LEVVCGVHNH PIEEHHGGHS 120 FAGRLSHEET MLLVDLSKNL VRPKDILNTL KERNAHNLST IKTIYNACHK HKVAEKVERS 180 QLQQLVAKLS EHQYIKWYRS RDKNEIVGDL FWAHPVSADL LRAFPRVLII DCTSKAYLYR 240 LPLLEIIGIT STEMTFSVAF AYLESEQEDN YTWVLNRLKS MMDDDAMPDV VVTNRDSALM 300 NAIEKVFPTS KNLLCRWHIN RNILTQGKKL FETKEIREKF MCRWNMLVYS STEDEYMDHL 360 FALEDEFVDY PEAIEYVTNT WLNEYKERFV AAWTNMIMHF GNVTTNKAKS AHEKLKKHLG 420 ASQGSFDTSW TKIHSLIEQQ HIDIKASLEK SSAIVQYNLD QDEFRELHGF VSTSAMPIII 480 AEAKRADLDG VDVSLCGCLT RRTYGLPCAH EIAEYKRTNQ PIPLDCIDPH WRKLDLVLGP 540 KKQIVELTCE AELELFAKRF NEQDRFGKLQ MLKKLKAILE SPECMSTMEP TINDDAHGGQ 600 ALIVYTSTSD GFEVEQSAQD GYSPGVSGVA GAVVNETVDT EKGEDY

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MDYTSEFTTN EVFKSKEALV EWTREVGRRN GLVIVIKTSD TGGNGRKPRI TFNCERGGNY  60
RKFKSTGIQK QKRTKIAGSK KCGCPFALKG QKLAAGDEWK LEVVCGVHNH PIEEHHGGHS  120
FAGRLSHEET MLLVDLSKNL VRPKDILNTL KERNAHNLST IKTIYNACHK HKVAEKVERS  180
QLQQLVAKLS EHQYIKWYRS RDKNEIVGDL FWAHPVSADL LRAFPRVLII DCTSKAYLYR  240
LPLLEIIGIT STEMTFSVAF AYLESEQEDN YTWVLNRLKS MMDDDAMPDV VVTNRDSALM  300
NAIEKVFPTS KNLLCRWHIN RNILTQGKKL FETKEIREKF MCRWNMLVYS STEDEYMDHL  360
FALEDEFVDY PEAIEYVTNT WLNEYKERFV AAWTNMIMHF GNVTTNKAKS AHEKLKKHLG  420
ASQGSFDTSW TKIHSLIEQQ HIDIKASLEK SSAIVQYNLD QDEFRELHGF VSTSAMPIII  480
AEAKRADLDG VDVSLCGCLT RRTYGLPCAH EIAEYKRTNQ PIPLDCIDPH WRKLDLVLGP  540
KKQIVELTCE AELELFAKRF NEQDRFGKLQ MLKKLKAILE SPECMSTMEP TINDDAHGGQ  600
ALIVYTSTSD GFEVEQSAQD GYSPGVSGVA GAVVNETVDT EKGEDY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901649.1	0.0	PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBL	A0A067EFY9	0.0	A0A067EFY9_CITSI; Uncharacterized protein
STRING	XP_006494697.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-10	FAR1 family protein