PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901330.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 269aa MW: 30467.4 Da PI: 9.197

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.3e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl XP_015901330.1 18 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-32	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-16	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-24	118	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MERNFGYENG VVMTRDPKPR LRWTADLHDR FVDAVTKLGG PDKATPKSVL RLMGLKGLTL 60 YHLKSHLQKY RLGQQARRQN PSEQTRDING GSYVQFSNNS PGTSTNSSRC DLDQAEIPIA 120 EALRCQIEVQ KRLQEQLEVQ KKLQMRIEAQ GKYLQAILEK AQKSLSVDMN GPGSLEAAKA 180 QLTDFNLALS NFMENINEVD RKEGILDMND VYKKANGSTF NVYEEGNREE AKDSKLKGSI 240 HFDLNAKGGY DFISSNGVEL EPKMFTYRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578082	2e-31	JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901330.1	0.0	myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	3e-91	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2P5FA92	1e-150	A0A2P5FA92_TREOI; Octamer-binding transcription factor
STRING	XP_010110423.1	1e-148	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	2e-73	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]